ERX2073824
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Bone
Cell type
Osteoblasts
NA
NA

Attributes by original data submitter

Sample

ENA first public
2018-03-15
ENA last update
2017-06-14
ENA-CHECKLIST
ERC000011
External Id
SAMEA104124583
INSDC center alias
Life Sciences Research Unit
INSDC center name
Life Sciences Research Unit
INSDC first public
2018-03-15T17:02:21Z
INSDC last update
2017-06-14T09:57:09Z
INSDC status
public
Submitter Id
Ob-Day5
cell type
ST2 differentiated in osteoblasts
common name
house mouse
lab host
Life Sciences Research Unit, University of Luxembourg
sample name
Ob-Day5
sex
male

Sequenced DNA Library

library_name
TC1-HINPUT-O-D5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina HiSeq2000 single-end sequencing library protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12042443
Reads aligned (%)
99.6
Duplicates removed (%)
24.5
Number of peaks
17036 (qval < 1E-05)

mm9

Number of total reads
12042443
Reads aligned (%)
99.6
Duplicates removed (%)
24.5
Number of peaks
17024 (qval < 1E-05)

Base call quality data from DBCLS SRA