ERX2073800
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Adipocyte
Cell type
ST-2
NA
NA

Attributes by original data submitter

Sample

ENA first public
2018-03-15
ENA last update
2017-06-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA104119184
INSDC center alias
Life Sciences Research Unit
INSDC center name
Life Sciences Research Unit
INSDC first public
2018-03-15T17:02:22Z
INSDC last update
2017-06-09T16:01:26Z
INSDC status
public
Submitter Id
ST2-D0
cell type
ST2
common name
house mouse
lab host
Life Sciences Research Unit, University of Luxembourg
sample name
ST2-D0
sex
male

Sequenced DNA Library

library_name
TC1-H3K27-ST2-D0
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina HiSeq2000 single-end sequencing library protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15865164
Reads aligned (%)
99.7
Duplicates removed (%)
4.9
Number of peaks
9295 (qval < 1E-05)

mm9

Number of total reads
15865164
Reads aligned (%)
99.7
Duplicates removed (%)
4.9
Number of peaks
9275 (qval < 1E-05)

Base call quality data from DBCLS SRA