ERX2049945
NextSeq 500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2017-12-31
ENA last update
2017-05-23
ENA-CHECKLIST
ERC000011
External Id
SAMEA104091591
INSDC center alias
GENENTECH INC.
INSDC center name
GENENTECH INC.
INSDC first public
2017-12-31T17:02:38Z
INSDC last update
2017-05-23T01:10:51Z
INSDC status
public
Submitter Id
CHIP_CBPP300_6
common name
human
sample name
CHIP_CBPP300_6

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
47611248
Reads aligned (%)
78.0
Duplicates removed (%)
9.7
Number of peaks
1323 (qval < 1E-05)

hg38

Number of total reads
47611248
Reads aligned (%)
79.6
Duplicates removed (%)
8.4
Number of peaks
1544 (qval < 1E-05)

Base call quality data from DBCLS SRA