ERX200553
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Homo sapiens
ENA first public
2013-01-30
ENA last update
2018-03-08
External Id
SAMEA1706593
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-30T11:24:07Z
INSDC last update
2018-03-08T15:30:07Z
INSDC status
public
Submitter Id
GM12892B1_70-sc-2011-09-30T11:53:09Z-1283446
common name
human
sample name
GM12892B1_70-sc-2011-09-30T11:53:09Z-1283446

Sequenced DNA Library

library_name
3737642
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
63411959
Reads aligned (%)
99.0
Duplicates removed (%)
1.5
Number of peaks
934 (qval < 1E-05)

hg19

Number of total reads
63411959
Reads aligned (%)
97.5
Duplicates removed (%)
1.6
Number of peaks
518 (qval < 1E-05)

Base call quality data from DBCLS SRA