ERX200532
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
B-Lymphocyte
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Sex
male
ArrayExpress-Species
Homo sapiens
ENA first public
2013-01-30
ENA last update
2018-03-08
External Id
SAMEA1706490
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-30T11:24:07Z
INSDC last update
2018-03-08T15:27:08Z
INSDC status
public
Submitter Id
GM06986-sc-2011-06-09T13:38:11Z-1162210
common name
human
sample name
GM06986-sc-2011-06-09T13:38:11Z-1162210

Sequenced DNA Library

library_name
3370352
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
134178146
Reads aligned (%)
99.6
Duplicates removed (%)
27.9
Number of peaks
2504 (qval < 1E-05)

hg19

Number of total reads
134178146
Reads aligned (%)
97.8
Duplicates removed (%)
29.1
Number of peaks
44669 (qval < 1E-05)

Base call quality data from DBCLS SRA