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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX200501
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
B-Lymphocyte
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2013-01-30
ENA last update
2018-03-08
External Id
SAMEA1706505
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-30T11:24:07Z
INSDC last update
2018-03-08T15:27:02Z
INSDC status
public
Submitter Id
GM11918-sc-2011-06-09T13:38:22Z-1162227
common name
human
sample name
GM11918-sc-2011-06-09T13:38:22Z-1162227
Sequenced DNA Library
library_name
2850735
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
44181697
Reads aligned (%)
99.5
Duplicates removed (%)
20.3
Number of peaks
978 (qval < 1E-05)
hg19
Number of total reads
44181697
Reads aligned (%)
97.8
Duplicates removed (%)
20.8
Number of peaks
1633 (qval < 1E-05)
Base call quality data from
DBCLS SRA