Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
B-Lymphocyte
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Sex
male
ArrayExpress-Species
Homo sapiens
ENA first public
2013-01-30
ENA last update
2018-03-08
External Id
SAMEA1706503
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-30T11:24:07Z
INSDC last update
2018-03-08T15:27:23Z
INSDC status
public
Submitter Id
GM11881-sc-2011-06-09T13:38:21Z-1162225
common name
human
sample name
GM11881-sc-2011-06-09T13:38:21Z-1162225

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
54528341
Reads aligned (%)
99.3
Duplicates removed (%)
24.2
Number of peaks
27003 (qval < 1E-05)

hg19

Number of total reads
54528341
Reads aligned (%)
97.3
Duplicates removed (%)
24.4
Number of peaks
31148 (qval < 1E-05)

Base call quality data from DBCLS SRA