ERX200432
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mammary epithelial cells
ArrayExpress-Immunoprecipitate
H3K27-3me
ArrayExpress-OrganismPart
mammary gland
ArrayExpress-Species
Mus musculus
ENA first public
2013-01-28
ENA last update
2018-03-08
External Id
SAMEA1690263
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-28T11:10:49Z
INSDC last update
2018-03-08T15:45:24Z
INSDC status
public
Submitter Id
WK8-sc-2012-04-23T16:03:08Z-1403325
common name
house mouse
sample description
+DOX H3K27
sample name
WK8-sc-2012-04-23T16:03:08Z-1403325

Sequenced DNA Library

library_name
5086274
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Pre-quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15737078
Reads aligned (%)
87.7
Duplicates removed (%)
12.7
Number of peaks
102 (qval < 1E-05)

mm9

Number of total reads
15737078
Reads aligned (%)
87.6
Duplicates removed (%)
13.1
Number of peaks
79 (qval < 1E-05)

Base call quality data from DBCLS SRA