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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Mammary epithelial cells
ATCC
MeSH
RIKEN BRC
ERX200429
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
Mammary epithelial cells
ArrayExpress-Immunoprecipitate
IgG
ArrayExpress-OrganismPart
mammary gland
ArrayExpress-Species
Mus musculus
ENA first public
2013-01-28
ENA last update
2018-03-08
External Id
SAMEA1690260
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-28T11:10:49Z
INSDC last update
2018-03-08T15:46:14Z
INSDC status
public
Submitter Id
WK5-sc-2012-04-23T16:01:00Z-1403322
common name
house mouse
sample description
+DOX IgG
sample name
WK5-sc-2012-04-23T16:01:00Z-1403322
Sequenced DNA Library
library_name
5086271
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Pre-quality controlled
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
9909177
Reads aligned (%)
89.5
Duplicates removed (%)
11.1
Number of peaks
88 (qval < 1E-05)
mm9
Number of total reads
9909177
Reads aligned (%)
89.4
Duplicates removed (%)
11.5
Number of peaks
60 (qval < 1E-05)
Base call quality data from
DBCLS SRA