ERX200418
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mammary epithelial cells
ArrayExpress-Immunoprecipitate
H3k4-3me
ArrayExpress-OrganismPart
mammary gland
ArrayExpress-Species
Mus musculus
ENA first public
2013-01-28
ENA last update
2018-03-08
External Id
SAMEA1690266
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-28T11:10:49Z
INSDC last update
2018-03-08T15:45:21Z
INSDC status
public
Submitter Id
WK3-sc-2012-04-23T15:59:10Z-1403320
common name
house mouse
sample description
-DOX H3K4
sample name
WK3-sc-2012-04-23T15:59:10Z-1403320

Sequenced DNA Library

library_name
5086269
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Pre-quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17112903
Reads aligned (%)
93.3
Duplicates removed (%)
34.4
Number of peaks
10694 (qval < 1E-05)

mm9

Number of total reads
17112903
Reads aligned (%)
93.2
Duplicates removed (%)
34.8
Number of peaks
10668 (qval < 1E-05)

Base call quality data from DBCLS SRA