ERX200413
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mammary epithelial cells
ArrayExpress-Immunoprecipitate
H3k4-3me
ArrayExpress-OrganismPart
mammary gland
ArrayExpress-Species
Mus musculus
ENA first public
2013-01-28
ENA last update
2018-03-08
External Id
SAMEA1690265
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-28T11:10:49Z
INSDC last update
2018-03-08T15:46:14Z
INSDC status
public
Submitter Id
WK7-sc-2012-04-23T16:02:34Z-1403324
common name
house mouse
sample description
+DOX H3K4
sample name
WK7-sc-2012-04-23T16:02:34Z-1403324

Sequenced DNA Library

library_name
5086273
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Pre-quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8276704
Reads aligned (%)
87.6
Duplicates removed (%)
8.8
Number of peaks
975 (qval < 1E-05)

mm9

Number of total reads
8276704
Reads aligned (%)
87.5
Duplicates removed (%)
9.0
Number of peaks
938 (qval < 1E-05)

Base call quality data from DBCLS SRA