ERX200407
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mammary epithelial cells
ArrayExpress-Immunoprecipitate
IgG
ArrayExpress-OrganismPart
mammary gland
ArrayExpress-Species
Mus musculus
ENA first public
2013-01-28
ENA last update
2018-03-08
External Id
SAMEA1690262
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-28T11:10:49Z
INSDC last update
2018-03-08T15:46:14Z
INSDC status
public
Submitter Id
WK1-sc-2012-04-23T15:58:15Z-1403318
common name
house mouse
sample description
-DOX IgG
sample name
WK1-sc-2012-04-23T15:58:15Z-1403318

Sequenced DNA Library

library_name
5086267
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Pre-quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14336294
Reads aligned (%)
89.8
Duplicates removed (%)
12.6
Number of peaks
88 (qval < 1E-05)

mm9

Number of total reads
14336294
Reads aligned (%)
89.7
Duplicates removed (%)
12.9
Number of peaks
65 (qval < 1E-05)

Base call quality data from DBCLS SRA