ERX199622
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2013-01-25
ENA last update
2018-03-08
External Id
SAMEA1696677
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-25T09:53:48Z
INSDC last update
2018-03-08T15:36:32Z
INSDC status
public
Submitter Id
H3K4_NSC_13-sc-2012-02-14T14:40:34Z-1360284
common name
house mouse
sample name
H3K4_NSC_13-sc-2012-02-14T14:40:34Z-1360284

Sequenced DNA Library

library_name
4624518
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10435358
Reads aligned (%)
96.5
Duplicates removed (%)
2.5
Number of peaks
14666 (qval < 1E-05)

mm9

Number of total reads
10435358
Reads aligned (%)
96.3
Duplicates removed (%)
2.6
Number of peaks
14646 (qval < 1E-05)

Base call quality data from DBCLS SRA