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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
ERX199615
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-Species
Mus musculus
ENA first public
2013-01-25
ENA last update
2018-03-08
External Id
SAMEA1696616
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-25T09:53:48Z
INSDC last update
2018-03-08T15:36:30Z
INSDC status
public
Submitter Id
Sox1l20_NSC_13_02-sc-2012-02-14T14:35:39Z-1360277
common name
house mouse
sample name
Sox1l20_NSC_13_02-sc-2012-02-14T14:35:39Z-1360277
Sequenced DNA Library
library_name
4624511
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
16007795
Reads aligned (%)
95.0
Duplicates removed (%)
9.8
Number of peaks
384 (qval < 1E-05)
mm9
Number of total reads
16007795
Reads aligned (%)
94.9
Duplicates removed (%)
10.1
Number of peaks
361 (qval < 1E-05)
Base call quality data from
DBCLS SRA