ERX199568
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2013-01-25
ENA last update
2018-03-08
External Id
SAMEA1696652
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-25T09:53:48Z
INSDC last update
2018-03-08T15:28:23Z
INSDC status
public
Submitter Id
A_E14_CTAP_ChIP_NSC-sc-2011-09-13T16:56:32Z-1277688
common name
house mouse
sample name
A_E14_CTAP_ChIP_NSC-sc-2011-09-13T16:56:32Z-1277688
strain
To be provided

Sequenced DNA Library

library_name
3789214
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20230113
Reads aligned (%)
10.1
Duplicates removed (%)
2.9
Number of peaks
1568 (qval < 1E-05)

mm9

Number of total reads
20230113
Reads aligned (%)
10.1
Duplicates removed (%)
3.3
Number of peaks
1525 (qval < 1E-05)

Base call quality data from DBCLS SRA