ERX199562
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2013-01-25
ENA last update
2018-03-08
External Id
SAMEA1696607
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-25T09:53:47Z
INSDC last update
2018-03-08T15:28:41Z
INSDC status
public
Submitter Id
A_Sox1ChIP_01_NSC-sc-2011-09-13T17:08:29Z-1277696
common name
house mouse
sample name
A_Sox1ChIP_01_NSC-sc-2011-09-13T17:08:29Z-1277696

Sequenced DNA Library

library_name
3789223
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33711396
Reads aligned (%)
95.0
Duplicates removed (%)
9.4
Number of peaks
168 (qval < 1E-05)

mm9

Number of total reads
33711396
Reads aligned (%)
94.9
Duplicates removed (%)
9.6
Number of peaks
150 (qval < 1E-05)

Base call quality data from DBCLS SRA