ERX199556
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2013-01-25
ENA last update
2018-03-08
External Id
SAMEA1696688
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-25T09:53:48Z
INSDC last update
2018-03-08T15:26:14Z
INSDC status
public
Submitter Id
2E_H3K9me3_SP_SOX2CTAP-sc-2011-05-12T12:23:50Z-1137507
common name
house mouse
sample name
2E_H3K9me3_SP_SOX2CTAP-sc-2011-05-12T12:23:50Z-1137507

Sequenced DNA Library

library_name
2727802
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
53608782
Reads aligned (%)
81.4
Duplicates removed (%)
11.1
Number of peaks
2823 (qval < 1E-05)

mm9

Number of total reads
53608782
Reads aligned (%)
81.2
Duplicates removed (%)
12.0
Number of peaks
2830 (qval < 1E-05)

Base call quality data from DBCLS SRA