ERX199555
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2013-01-25
ENA last update
2018-03-08
External Id
SAMEA1696632
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-01-25T09:53:47Z
INSDC last update
2018-03-08T15:26:22Z
INSDC status
public
Submitter Id
2E_H3K4me3_SP_SOX2CTAP-sc-2011-05-12T12:23:49Z-1137506
common name
house mouse
sample name
2E_H3K4me3_SP_SOX2CTAP-sc-2011-05-12T12:23:49Z-1137506

Sequenced DNA Library

library_name
2727801
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14796825
Reads aligned (%)
89.3
Duplicates removed (%)
8.9
Number of peaks
13518 (qval < 1E-05)

mm9

Number of total reads
14796825
Reads aligned (%)
88.9
Duplicates removed (%)
9.5
Number of peaks
13505 (qval < 1E-05)

Base call quality data from DBCLS SRA