ERX1965631
Illumina HiSeq 4000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Embryonic cells
NA
NA

Attributes by original data submitter

Sample

ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2017-05-04T17:01:35Z
ENA-LAST-UPDATE
2017-03-30T15:04:30Z
External Id
SAMEA103953774
INSDC center name
KI-BN
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:30Z
INSDC status
public
Submitter Id
Oct4_AF1759_wild-type-mES_Replicate-1_Batch-2
cell line
mouse embryonic cell
common name
house mouse
sample name
Oct4_AF1759_wild-type-mES_Replicate-1_Batch-2
scientific_name
Mus musculus

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29824435
Reads aligned (%)
96.9
Duplicates removed (%)
17.3
Number of peaks
1469 (qval < 1E-05)

mm9

Number of total reads
29824435
Reads aligned (%)
96.6
Duplicates removed (%)
17.4
Number of peaks
1327 (qval < 1E-05)

Base call quality data from DBCLS SRA