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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Embryonic cells
ATCC
MeSH
RIKEN BRC
ERX1965629
Illumina HiSeq 4000 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Embryo
Cell type
Embryonic cells
NA
NA
Attributes by original data submitter
Sample
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2017-05-04T17:01:35Z
ENA-LAST-UPDATE
2017-03-30T15:04:30Z
External Id
SAMEA103953772
INSDC center name
KI-BN
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:30Z
INSDC status
public
Submitter Id
Mouse_IgG_sc-2025_Tet-TKO-mES_Batch-2
cell line
mouse embryonic cell deficient in Tet1, Tet2 and Tet3
common name
house mouse
sample name
Mouse_IgG_sc-2025_Tet-TKO-mES_Batch-2
scientific_name
Mus musculus
Sequenced DNA Library
library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
25878352
Reads aligned (%)
92.3
Duplicates removed (%)
21.4
Number of peaks
391 (qval < 1E-05)
mm9
Number of total reads
25878352
Reads aligned (%)
92.2
Duplicates removed (%)
21.5
Number of peaks
385 (qval < 1E-05)
Base call quality data from
DBCLS SRA