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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Epitope tags
wikigenes
PDBj
CellType: T cells
ATCC
MeSH
RIKEN BRC
ERX1934187
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Epitope tags
Cell type
Cell type Class
Blood
Cell type
T cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
T cells
ArrayExpress-Immunoprecipitate
anti-FLAG
ArrayExpress-Sex
mixed
ArrayExpress-Species
Mus musculus
ENA first public
2017-03-07
ENA last update
2016-09-27
ENA-CHECKLIST
ERC000011
External Id
SAMEA4467433
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2017-03-07T13:52:36Z
INSDC last update
2016-09-27T12:03:25Z
INSDC status
public
Submitter Id
f7e7eb60-848f-11e6-b105-68b59976a384
common name
house mouse
sample description
CD2
sample name
f7e7eb60-848f-11e6-b105-68b59976a384
Sequenced DNA Library
library_name
NT862263E
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
13580669
Reads aligned (%)
97.5
Duplicates removed (%)
26.3
Number of peaks
162 (qval < 1E-05)
mm9
Number of total reads
13580669
Reads aligned (%)
97.4
Duplicates removed (%)
26.4
Number of peaks
143 (qval < 1E-05)
Base call quality data from
DBCLS SRA