ERX190777
ChIP-seq on p300, NFI and H3K27ac in mouse neural stem cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ENA first public
2013-08-12
ENA last update
2018-03-08
External Id
SAMEA2045825
INSDC center alias
Centre for Organismal Studies (COS) - University of Heidelberg
INSDC center name
Centre for Organismal Studies (COS) - University of Heidelberg
INSDC first public
2013-08-12T17:00:28Z
INSDC last update
2018-03-08T16:13:34Z
INSDC status
public
Submitter Id
E-MTAB-1423:H3K27ac_proNSC
broker name
ArrayExpress
cell line
NS5
common name
house mouse
genotype
wild type
growth condition
proliferation-promoting medium
sample name
E-MTAB-1423:H3K27ac_proNSC

Sequenced DNA Library

library_name
H3K27ac_proNSC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin Immunoprecipitation with antibodies to H3K27ac (Abcam, ab4729), p300 (Santa Cruz, sc-585) and NFI transcription factors (Santa Cruz, sc-30918).

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
43966302
Reads aligned (%)
88.3
Duplicates removed (%)
43.0
Number of peaks
27611 (qval < 1E-05)

mm9

Number of total reads
43966302
Reads aligned (%)
88.2
Duplicates removed (%)
43.0
Number of peaks
27613 (qval < 1E-05)

Base call quality data from DBCLS SRA