Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

ENA first public
2013-08-30
ENA last update
2018-03-08
External Id
SAMEA2044203
INSDC center alias
EMBL-EBI
INSDC center name
EMBL-EBI
INSDC first public
2013-08-30T17:00:54Z
INSDC last update
2018-03-08T16:12:01Z
INSDC status
public
Submitter Id
E-MTAB-1414:0ON489
age
3-6 month
broker name
ArrayExpress
common name
house mouse
developmental stage
adult
disease state
normal
organism part
liver
sample name
E-MTAB-1414:0ON489
sex
male
strain or line
C57BL/6J

Sequenced DNA Library

library_name
do566
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Extraction.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
17224577
Reads aligned (%)
98.4
Duplicates removed (%)
12.0
Number of peaks
535 (qval < 1E-05)

mm9

Number of total reads
17224577
Reads aligned (%)
98.3
Duplicates removed (%)
12.2
Number of peaks
603 (qval < 1E-05)

Base call quality data from DBCLS SRA