ERX1886408
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2019-09-26
ENA last update
2017-02-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA81190918
INSDC center alias
Heinrich-Pette-Institute, Leibniz-Institute for experimental Virology
INSDC center name
Heinrich-Pette-Institute, Leibniz-Institute for experimental Virology
INSDC first public
2019-09-26T17:03:47Z
INSDC last update
2017-02-09T10:36:11Z
INSDC status
public
Submitter Id
TG_chip_0033
common name
human
sample name
TG_chip_0033

Sequenced DNA Library

library_name
slkp_h3k4me3_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10691661
Reads aligned (%)
94.4
Duplicates removed (%)
3.5
Number of peaks
16683 (qval < 1E-05)

hg19

Number of total reads
10691661
Reads aligned (%)
93.8
Duplicates removed (%)
4.2
Number of peaks
16724 (qval < 1E-05)

Base call quality data from DBCLS SRA