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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: iPSC derived macrophages
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1880513
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA
Attributes by original data submitter
Sample
Material
cell line
Sample Name
HPSI0114i-iisa_3 derived macrophage day 48 untreated
Sex
male
age
55-59
cell type
iPSC derived cell line
differentiation start date
2015/03/26
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2015-05-13
target cell type
macrophage
time point
day 48
Sequenced DNA Library
library_name
NT641013I
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
12350689
Reads aligned (%)
66.1
Duplicates removed (%)
11.7
Number of peaks
30084 (qval < 1E-05)
hg19
Number of total reads
12350689
Reads aligned (%)
66.1
Duplicates removed (%)
11.7
Number of peaks
29977 (qval < 1E-05)
Base call quality data from
DBCLS SRA