ERX1877545
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI1113i-hayt_1 derived macrophage day 27 with salmonella
Sex
male
age
70-74
cell type
iPSC derived cell line
differentiation start date
2015/09/12
disease state
normal
ethnicity
White - Other
project
HipSci
sampling date
2015/10/09
target cell type
macrophage
time point
day 27
treatment
salmonella infection

Sequenced DNA Library

library_name
NT730317S
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4135762
Reads aligned (%)
64.7
Duplicates removed (%)
14.4
Number of peaks
8198 (qval < 1E-05)

hg19

Number of total reads
4135762
Reads aligned (%)
64.5
Duplicates removed (%)
14.5
Number of peaks
8193 (qval < 1E-05)

Base call quality data from DBCLS SRA