ERX1877534
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI1213i-babk_2 derived macrophage replicate 1 day 53 untreated
Sex
female
age
50-54
cell type
iPSC derived cell line
differentiation start date
2015/10/12
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2015/12/04
target cell type
macrophage
time point
day 53

Sequenced DNA Library

library_name
NT730379J
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4107043
Reads aligned (%)
59.8
Duplicates removed (%)
29.5
Number of peaks
3423 (qval < 1E-05)

hg19

Number of total reads
4107043
Reads aligned (%)
59.5
Duplicates removed (%)
29.5
Number of peaks
3439 (qval < 1E-05)

Base call quality data from DBCLS SRA