ERX1877394
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI0913i-coyi_3 derived macrophage day 36 with salmonella and IFNg
Sex
female
age
65-69
cell type
iPSC derived cell line
differentiation start date
2015/09/30
disease state
normal
donor id
SAMEA2398840
ethnicity
White - White British
phenotype
EFO_0005740;CL0000235;PATO_0000461
project
HipSci
sampling date
2015/11/05
target cell type
macrophage
time point
day 36
treatment
interferon gamma

Sequenced DNA Library

library_name
NT730355B
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4056905
Reads aligned (%)
82.9
Duplicates removed (%)
25.6
Number of peaks
9632 (qval < 1E-05)

hg19

Number of total reads
4056905
Reads aligned (%)
82.8
Duplicates removed (%)
25.7
Number of peaks
9649 (qval < 1E-05)

Base call quality data from DBCLS SRA