ERX1877374
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI1113i-qolg_3 derived macrophage day 34 with salmonella and IFNg
Sex
male
age
35-39
cell type
iPSC derived cell line
differentiation start date
2015/10/10
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2015-11-13
target cell type
macrophage
time point
day 34
treatment
interferon gamma

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
2953996
Reads aligned (%)
76.3
Duplicates removed (%)
16.7
Number of peaks
1309 (qval < 1E-05)

hg19

Number of total reads
2953996
Reads aligned (%)
75.8
Duplicates removed (%)
16.8
Number of peaks
1293 (qval < 1E-05)

Base call quality data from DBCLS SRA