ERX1877354
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI0214i-pelm_3 derived macrophage day 40 with salmonella
Sex
female
age
40-44
cell type
iPSC derived cell line
differentiation start date
2015/07/03
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2015/08/12
target cell type
macrophage
time point
day 40
treatment
salmonella infection

Sequenced DNA Library

library_name
NT730379J
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4110242
Reads aligned (%)
59.8
Duplicates removed (%)
29.8
Number of peaks
3331 (qval < 1E-05)

hg19

Number of total reads
4110242
Reads aligned (%)
59.6
Duplicates removed (%)
29.9
Number of peaks
3325 (qval < 1E-05)

Base call quality data from DBCLS SRA