ERX1877267
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI0314i-fafq_1 derived macrophage day 28 with salmonella and IFNg
Sex
male
age
60-64
cell type
iPSC derived cell line
differentiation start date
2015/09/16
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2015-10-14
target cell type
macrophage
time point
day 28
treatment
interferon gamma

Sequenced DNA Library

library_name
NT730343U
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
2733481
Reads aligned (%)
83.6
Duplicates removed (%)
36.3
Number of peaks
773 (qval < 1E-05)

hg19

Number of total reads
2733481
Reads aligned (%)
83.4
Duplicates removed (%)
36.4
Number of peaks
789 (qval < 1E-05)

Base call quality data from DBCLS SRA