ERX1877117
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI0913i-oapg_5 derived macrophage day 40 with salmonella
Sex
female
age
40-44
cell type
iPSC derived cell line
differentiation start date
2015/06/21
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2015-07-31
target cell type
macrophage
time point
day 40
treatment
salmonella infection

Sequenced DNA Library

library_name
NT697510A
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Pre-quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5253602
Reads aligned (%)
74.5
Duplicates removed (%)
19.2
Number of peaks
17616 (qval < 1E-05)

hg19

Number of total reads
5253602
Reads aligned (%)
74.3
Duplicates removed (%)
19.3
Number of peaks
17588 (qval < 1E-05)

Base call quality data from DBCLS SRA