ERX1877053
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI0613i-febc_2 derived macrophage day 29 with salmonella
Sex
female
cell type
iPSC derived cell line
differentiation start date
2015/07/06
disease state
normal
donor id
SAMEA2397821
phenotype
EFO_0005740;CL0000235;PATO_0000461
project
HipSci
sampling date
2015/08/04
target cell type
macrophage
time point
day 29
treatment
salmonella infection

Sequenced DNA Library

library_name
NT697522E
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Pre-quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5257729
Reads aligned (%)
71.1
Duplicates removed (%)
13.3
Number of peaks
6000 (qval < 1E-05)

hg19

Number of total reads
5257729
Reads aligned (%)
70.6
Duplicates removed (%)
13.4
Number of peaks
5921 (qval < 1E-05)

Base call quality data from DBCLS SRA