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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: iPSC derived macrophages
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1877020
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA
Attributes by original data submitter
Sample
Material
cell line
Sample Name
HPSI0214i-heja_1 derived macrophage day 44 with salmonella and IFNg
Sex
male
age
70-74
cell type
iPSC derived cell line
differentiation start date
2015/06/29
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2015/08/12
target cell type
macrophage
time point
day 44
treatment
interferon gamma
Sequenced DNA Library
library_name
NT697525H
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Pre-quality controlled
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
5907794
Reads aligned (%)
73.2
Duplicates removed (%)
9.1
Number of peaks
19000 (qval < 1E-05)
hg19
Number of total reads
5907794
Reads aligned (%)
73.0
Duplicates removed (%)
9.1
Number of peaks
18992 (qval < 1E-05)
Base call quality data from
DBCLS SRA