ERX1876914
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived cells
NA
NA

Attributes by original data submitter

Sample

age
55-59
cell type
iPSC derived cell line
differentiation start date
2015/03/31
disease state
normal
ethnicity
White - White British
material
cell line
project
HipSci
sample name
HPSI1213i-pahc_4 derived macrophage day 36 with IFNg
sampling date
2015/05/06
sex
female
target cell type
macrophage
time point
day 36
treatment
interferon gamma

Sequenced DNA Library

library_name
NT641006J
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14473851
Reads aligned (%)
71.4
Duplicates removed (%)
22.9
Number of peaks
31351 (qval < 1E-05)

hg19

Number of total reads
14473851
Reads aligned (%)
71.1
Duplicates removed (%)
23.0
Number of peaks
31424 (qval < 1E-05)

Base call quality data from DBCLS SRA