ERX1876889
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI1113i-eofe_1 derived macrophage day 41 with salmonella and IFNg
Sex
female
age
45-49
cell type
iPSC derived cell line
differentiation start date
2014/11/01
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2014-12-12
target cell type
macrophage
time point
day 41
treatment
interferon gamma

Sequenced DNA Library

library_name
NT595716V
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12595783
Reads aligned (%)
61.4
Duplicates removed (%)
6.9
Number of peaks
34671 (qval < 1E-05)

hg19

Number of total reads
12595783
Reads aligned (%)
61.3
Duplicates removed (%)
6.9
Number of peaks
34613 (qval < 1E-05)

Base call quality data from DBCLS SRA