ERX1873658
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Digestive tract
Cell type
DLD-1
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

ENA first public
2018-01-31
ENA last update
2017-01-27
ENA-CHECKLIST
ERC000011
External Id
SAMEA55475668
INSDC center alias
Biosystems and Integrative Sciences Institute
INSDC center name
Biosystems and Integrative Sciences Institute
INSDC first public
2018-01-31T17:02:40Z
INSDC last update
2017-01-27T17:11:40Z
INSDC status
public
Submitter Id
HAX12
cell line
DLD-1
common name
human
sample name
HAX12

Sequenced DNA Library

library_name
HAX-12
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq DNA sample prep kit from illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10013044
Reads aligned (%)
97.6
Duplicates removed (%)
2.2
Number of peaks
318 (qval < 1E-05)

hg19

Number of total reads
10013044
Reads aligned (%)
96.9
Duplicates removed (%)
2.8
Number of peaks
478 (qval < 1E-05)

Base call quality data from DBCLS SRA