Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: DLD-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1873648
Illumina HiSeq 2000 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Digestive tract
Cell type
DLD-1
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
ENA first public
2018-01-31
ENA last update
2017-01-27
ENA-CHECKLIST
ERC000011
External Id
SAMEA55468168
INSDC center alias
Biosystems and Integrative Sciences Institute
INSDC center name
Biosystems and Integrative Sciences Institute
INSDC first public
2018-01-31T17:02:40Z
INSDC last update
2017-01-27T17:11:40Z
INSDC status
public
Submitter Id
HAX2
cell line
DLD-1
common name
human
sample name
HAX2
Sequenced DNA Library
library_name
HAX-2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq DNA sample prep kit from illumina
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
9158255
Reads aligned (%)
98.0
Duplicates removed (%)
1.3
Number of peaks
263 (qval < 1E-05)
hg19
Number of total reads
9158255
Reads aligned (%)
97.3
Duplicates removed (%)
1.8
Number of peaks
402 (qval < 1E-05)
Base call quality data from
DBCLS SRA