ERX1869488
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI0214i-pelm_3 derived macrophage day 40 with salmonella
Sex
female
age
40-44
cell type
iPSC derived cell line
differentiation start date
2015/07/03
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2015/08/12
target cell type
macrophage
time point
day 40
treatment
salmonella infection

Sequenced DNA Library

library_name
15486198
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
2288614
Reads aligned (%)
59.7
Duplicates removed (%)
24.3
Number of peaks
1018 (qval < 1E-05)

hg19

Number of total reads
2288614
Reads aligned (%)
59.5
Duplicates removed (%)
24.3
Number of peaks
1027 (qval < 1E-05)

Base call quality data from DBCLS SRA