ERX1869471
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI1013i-pamv_3 derived macrophage day 30 with salmonella
Sex
male
age
65-69
cell type
iPSC derived cell line
differentiation start date
2015/07/01
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2015-07-31
target cell type
macrophage
time point
day 30
treatment
salmonella infection

Sequenced DNA Library

library_name
14873591
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Pre-quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5274899
Reads aligned (%)
75.1
Duplicates removed (%)
22.2
Number of peaks
7966 (qval < 1E-05)

hg19

Number of total reads
5274899
Reads aligned (%)
74.8
Duplicates removed (%)
22.2
Number of peaks
7912 (qval < 1E-05)

Base call quality data from DBCLS SRA