ERX1869455
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI1013i-kuxp_1 derived macrophage day 31 with salmonella
Sex
male
age
25-29
cell type
iPSC derived cell line
differentiation start date
2015/06/21
disease state
normal
ethnicity
White - Other
project
HipSci
sampling date
2015-07-22
target cell type
macrophage
time point
day 31
treatment
salmonella infection

Sequenced DNA Library

library_name
14873575
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Pre-quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5791421
Reads aligned (%)
72.0
Duplicates removed (%)
17.3
Number of peaks
14508 (qval < 1E-05)

hg19

Number of total reads
5791421
Reads aligned (%)
71.7
Duplicates removed (%)
17.3
Number of peaks
14484 (qval < 1E-05)

Base call quality data from DBCLS SRA