ERX1869437
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI0713i-cicb_3 derived macrophage day 25 with salmonella
Sex
male
cell type
iPSC derived cell line
differentiation start date
2015/03/30
disease state
normal
donor id
SAMEA2398835
phenotype
EFO_0005740;CL0000235;PATO_0000461
project
HipSci
sampling date
2015-04-24
target cell type
macrophage
time point
day 25
treatment
salmonella infection

Sequenced DNA Library

library_name
14088150
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11497841
Reads aligned (%)
71.8
Duplicates removed (%)
7.3
Number of peaks
21198 (qval < 1E-05)

hg19

Number of total reads
11497841
Reads aligned (%)
71.5
Duplicates removed (%)
7.3
Number of peaks
21085 (qval < 1E-05)

Base call quality data from DBCLS SRA