ERX1869424
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived macrophages
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI1113i-bima_1 derived macrophage day 35 untreated
Sex
male
age
40-44
cell type
iPSC derived cell line
differentiation start date
2014/11/07
disease state
normal
ethnicity
White - White British
project
HipSci
sampling date
2014-12-12
target cell type
macrophage
time point
day 35

Sequenced DNA Library

library_name
12881484
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10155281
Reads aligned (%)
64.8
Duplicates removed (%)
13.6
Number of peaks
32873 (qval < 1E-05)

hg19

Number of total reads
10155281
Reads aligned (%)
64.6
Duplicates removed (%)
13.6
Number of peaks
32949 (qval < 1E-05)

Base call quality data from DBCLS SRA