ERX1851644
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
mESC
ArrayExpress-Sex
female
ArrayExpress-Species
Mus musculus
ENA first public
2017-01-11
ENA last update
2016-08-24
ENA-CHECKLIST
ERC000011
External Id
SAMEA4394648
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2017-01-11T12:01:19Z
INSDC last update
2016-08-24T15:45:30Z
INSDC status
public
Submitter Id
887d0280-62dc-11e6-b4fe-68b59976a384
common name
house mouse
sample description
RNAseq libraries from rRNA depleted whole RNA
sample name
887d0280-62dc-11e6-b4fe-68b59976a384

Sequenced DNA Library

library_name
NT841477C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7809522
Reads aligned (%)
80.8
Duplicates removed (%)
18.5
Number of peaks
12250 (qval < 1E-05)

mm9

Number of total reads
7809522
Reads aligned (%)
80.7
Duplicates removed (%)
18.6
Number of peaks
12199 (qval < 1E-05)

Base call quality data from DBCLS SRA