ERX1840480
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI0214i-kucg_2 derived sensory neuron replicate A
Sex
male
age
65-69
cell type
iPSC derived cell line
disease state
normal
ethnicity
White - White British
project
HipSci
target cell type
sensory neuron

Sequenced DNA Library

library_name
NT712089A
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index pre quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
2889419
Reads aligned (%)
83.5
Duplicates removed (%)
34.3
Number of peaks
46 (qval < 1E-05)

hg19

Number of total reads
2889419
Reads aligned (%)
83.3
Duplicates removed (%)
34.3
Number of peaks
55 (qval < 1E-05)

Base call quality data from DBCLS SRA