ERX1823630
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
CD4 T cells
ArrayExpress-Immunoprecipitate
anti-FLAG
ArrayExpress-Phenotype
Wild type
ArrayExpress-Sex
mixed
ArrayExpress-Species
Mus musculus
ENA first public
2016-12-13
ENA last update
2016-08-17
ENA-CHECKLIST
ERC000011
External Id
SAMEA4384231
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-12-13T11:56:11Z
INSDC last update
2016-08-17T12:03:10Z
INSDC status
public
Submitter Id
29dd8f80-5e66-11e6-b4e1-68b59976a384
common name
house mouse
sample description
FLAG_ChIPmen
sample name
29dd8f80-5e66-11e6-b4e1-68b59976a384

Sequenced DNA Library

library_name
NT829363P
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9639813
Reads aligned (%)
96.1
Duplicates removed (%)
16.9
Number of peaks
7198 (qval < 1E-05)

mm9

Number of total reads
9639813
Reads aligned (%)
95.9
Duplicates removed (%)
17.0
Number of peaks
7210 (qval < 1E-05)

Base call quality data from DBCLS SRA