ERX1823617
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
CD4 T cells
ArrayExpress-Immunoprecipitate
anti-H3K27me3
ArrayExpress-Phenotype
Wild type
ArrayExpress-Sex
mixed
ArrayExpress-Species
Mus musculus
ENA first public
2016-12-13
ENA last update
2016-08-17
ENA-CHECKLIST
ERC000011
External Id
SAMEA4384302
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-12-13T11:56:11Z
INSDC last update
2016-08-17T12:16:47Z
INSDC status
public
Submitter Id
29d6b1b0-5e66-11e6-b4e1-68b59976a384
common name
house mouse
sample description
H3K27me3_ChIPmen
sample name
29d6b1b0-5e66-11e6-b4e1-68b59976a384

Sequenced DNA Library

library_name
NT829362O
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10863009
Reads aligned (%)
95.8
Duplicates removed (%)
5.4
Number of peaks
2091 (qval < 1E-05)

mm9

Number of total reads
10863009
Reads aligned (%)
95.7
Duplicates removed (%)
5.5
Number of peaks
2073 (qval < 1E-05)

Base call quality data from DBCLS SRA