ERX1817838
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2016-12-05
ENA last update
2016-12-05
ENA-CHECKLIST
ERC000011
External Id
SAMEA20207668
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2016-12-05T17:01:57Z
INSDC last update
2016-12-05T14:53:25Z
INSDC status
public
Submitter Id
Hum_Fib_WI38_CTCF
common name
human
sample name
Hum_Fib_WI38_CTCF

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9914369
Reads aligned (%)
93.4
Duplicates removed (%)
34.2
Number of peaks
20478 (qval < 1E-05)

hg19

Number of total reads
9914369
Reads aligned (%)
93.0
Duplicates removed (%)
34.6
Number of peaks
20355 (qval < 1E-05)

Base call quality data from DBCLS SRA