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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
ERX1817540
Illumina HiSeq 2000 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
ENA first public
2016-12-05
ENA last update
2016-12-05
ENA-CHECKLIST
ERC000011
External Id
SAMEA19963168
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2016-12-05T17:01:57Z
INSDC last update
2016-12-05T12:36:18Z
INSDC status
public
Submitter Id
CTCFMut_120_12_colon_CTCF
common name
house mouse
sample name
CTCFMut_120_12_colon_CTCF
Sequenced DNA Library
library_name
ChIP_seq_Mouse_Colon
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
3199516
Reads aligned (%)
96.6
Duplicates removed (%)
10.8
Number of peaks
12389 (qval < 1E-05)
mm9
Number of total reads
3199516
Reads aligned (%)
96.5
Duplicates removed (%)
10.8
Number of peaks
12385 (qval < 1E-05)
Base call quality data from
DBCLS SRA