ERX1817536
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2016-12-05
ENA last update
2016-12-05
ENA-CHECKLIST
ERC000011
External Id
SAMEA19960168
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2016-12-05T17:01:57Z
INSDC last update
2016-12-05T12:36:17Z
INSDC status
public
Submitter Id
Null_130_14_H3K27ac
common name
house mouse
sample name
Null_130_14_H3K27ac

Sequenced DNA Library

library_name
ChIP_seq_Mouse_Colon
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31334500
Reads aligned (%)
95.4
Duplicates removed (%)
2.2
Number of peaks
3078 (qval < 1E-05)

mm9

Number of total reads
31334500
Reads aligned (%)
95.3
Duplicates removed (%)
2.3
Number of peaks
3080 (qval < 1E-05)

Base call quality data from DBCLS SRA